If VS Code freezes on open, the notebook is often too heavy to render because outputs are saved inside the .ipynb (dataframes, logs, plots, HTML). Clearing outputs reduces the file to cells only, ...

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notebooks_2020_10_08_bulk_RNAseq_pathwayAnalysis.ipynb - a bulk RNAseq analysis tutorial I wrote using kallisto quantified data (R) youtube link for a walkthrough of ...

Abstract: Jupyter notebooks have become central in data science, integrating code, text and output in a flexible environment. With the rise of machine learning (ML), notebooks are increasingly used ...

Physics and Python stuff. Most of the videos here are either adapted from class lectures or solving physics problems. I really like to use numerical calculations without all the fancy programming ...

Abstract: As the need for platforms that simplify and streamline analysis workflows in multidisciplinary research continues to grow, tools like Jupyter Notebooks have become essential for integrating ...

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