ENCODE
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publications – ENCODE
The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental …
Data – ENCODE
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Project Overview – ENCODE
The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements …
Citing ENCODE
Jan 30, 2019 · External data users may freely download, analyze and publish results based on any ENCODE data without restrictions. This applies to all datasets, regardless of type or size, …
Getting Started – ENCODE
The ENCODE Portal, developed and maintained by the Data Coordination Center (ENCODE DCC), is the canonical source for all experimental metadata and data from ENCODE and …
ATAC-seq Data Standards and Processing Pipeline – ENCODE
The ENCODE ATAC-seq pipeline is used for quality control and statistical signal processing of short-read sequencing data, producing alignments and measures of enrichment.
Access to ENCODE data
All data generated by the ENCODE consortium is submitted to the DCC and available from the ENCODE portal (http://www.encodeproject.org). The data are reviewed for quality and …
Histone ChIP-seq Data Standards and Processing Pipeline - ENCODE
The ENCODE consortium has developed two analysis pipelines to study the different classes of protein-chromatin interactions. Both ChIP-seq piplines share the same mapping steps, but …
Search – ENCODE
PRO-cap in peripheral blood mononuclear cell Homo sapiens peripheral blood mononuclear cell Lab: Haiyuan Yu, Cornell Project: ENCODE Library construction method: capped RNA …